Hypoxia and lymphatic endothelial cells
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(Redirected from GSE5579)
| PubMed ID: | 17442415 |
|---|---|
| Contact: | Ana Rouzaut
|
| Species: | Homo sapiens |
| Platform: | Affymetrix GeneChip Human Genome U133 Plus 2.0 Array |
| Number of Samples: | 4 |
| Date Range: | 03/01/2005 - 03/01/2005 |
| Experiment Quality: | 99.45 3.96 % |
| Link to Repository: | GSE5579 |
| Original Intensity Data: | Download |
| Clean Intensity Data: | Download |
| Original PLIER Data: | Download |
| Clean PLIER Data: | Download |
| Clean CEL Files: | |
| Data Rank: | 
|
Lymphatic endothelial cells were grown under normoxia, hypoxia (1% 0xygen) and conditioned medio from NSLCN growth under normoxia or hypoxia. Gene expression was measured and comparison between samples performed.
Design: RNA from different donnors where extracted, pooled to avoid interindividual differences and labeled. Microarrays hybridized and analyzed.
Type: Comparative genomic hybridization
Contents |
[edit] Contributors
- Ana Rouzaut
- Juan J Martinez Irujo
- Marta Irigoyen
- Elena Anso
[edit] Protocols
[edit] References
[edit] Links
GEO Accession for this experiment: GSE5579. (Public on Aug 23 2007)
PubMed abstract: 17442415
RAW data: tar file.
[edit] Analysis
 Before Normalization |
 After Normalization & Cleaning |
[edit] Samples/Quality Control
| Sample | Date Scanned | Source Link | Probe Variance Data | Artifact Mask | Quality Score |
|---|---|---|---|---|---|
| Lymphatic endothelial in normoxia | 03/01/05 12:06:24 | GSM130277 | 
| 
| 99.7175 1.32 % |
| Lymphatic endothelial cells upon hypoxia | 03/01/05 13:12:01 | GSM130278 | 
| 
| 99.4924 8.03 % |
| Lymphatic endothelial cells upon conditioned medium from NSCLC 24 h | 03/01/05 12:53:16 | GSM130280 | 
| 
| 99.2 5.64 % |
| Lymphatic endothelial cells upon conditioned medium from NSCLC hypoxia 24 h | 03/01/05 12:34:51 | GSM130281 | 
| 
| 99.3998 0.86 % |
